Welcome to the Biotage Flash Purification Blogs.

    Can Flash Chromatography be Green? Part 1

    January 4, 2021 at 2:30 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Solvents, Green, Media and Resin


    The term “Green Chemistry” has become a major part of the science community’s lexicon. When I think about green chemistry and its relationship to flash column chromatography I think of two specific areas where it applies...

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    When should I add acid to my detector make-up solvent when using mass-directed flash chromatography?

    November 20, 2020 at 2:57 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Reversed-phase, Solvents

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    Increasingly, organic and medicinal chemistry labs use mass-directed flash chromatography to isolate synthesized compounds. Mass-directed flash chromatography benefits are many, including collecting only the targeted molecule(s) in the reaction mixture. This approach simplifies compound purification since you know what you have made and it's associated mass.

    However, there are mass detection nuances that can be challenging. One of these is to know when an acid should be added to the mass detector’s make-up solvent to protonate targeted molecules. In this post, I will provide some insight on this topic.

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    How should I purify a complex, polar, amide reaction mixture?

    August 12, 2020 at 1:46 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, ION exchange


    Synthetic chemists continually seek ways to create novel compounds. Along the way they evaluate reagents, solvents, and reaction conditions giving rise to various reaction products and by-products.

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    When should I use an amine-bonded silica for flash chromatography?

    May 8, 2020 at 8:30 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Sfär, Media and Resin, Normal Phase


    Flash chromatography is a standard part of an organic chemist’s workflow. It is utilized after most reaction steps in order to remove most of the generated by-products and excess reagents.

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    5 Steps to successful flash chromatography

    April 20, 2020 at 10:15 AM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Reversed-phase, Solvents, Media and Resin, Loading Techniques, Normal Phase, Pillar Page


    The bane of organic synthesis for most chemists is purification rather than synthesis. Synthetic reaction mixtures are rarely devoid of impurities so some type of purification is necessary.  Most often flash chromatography is used but for many chemists, it is less well understood than their chemical reaction and provides some level of anxiety.

    In this post, I will summarize the five most important steps to creating a successful flash chromatography method and thus the anxiety associated with it.

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    How does an alkaline pH affect normal-phase flash chromatography separations?

    April 7, 2020 at 6:25 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Solvents, Sfär, Normal Phase, Isolera


    The products of organic synthesis are designed with specific functional groups in order to possess desired properties. Depending on the compound’s functionality, it can be neutral, acidic, or basic as determined by a compound measurement called pKa or acid dissociation constant. Compounds with low pKa are typically acidic while those with high pKa tend to be basic. Compounds with a pKa near 7 are deemed neutral.

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    How do I purify ionizable organic amine compounds using flash column chromatography?

    November 21, 2019 at 3:59 PM / by Bob Bickler posted in Amine, Chromatography Fundamentals, Solvents, Troubleshooting and Optimization, Green, Media and Resin


    For most organic reaction mixture purifications the process is fairly straightforward. Use hexane/ethyl acetate or, for polar compounds, DCM/MeOH.  But what do you do if this doesn't work and your compounds are basic organic amines?

    In this post, I re-examine the options available to achieve an acceptable organic amine purification when typical separation methods are insufficient.

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    Is there an easy way to purify organic amines?

    April 11, 2019 at 9:35 AM / by Bob Bickler posted in Amine, Solvents


    If you synthesize organic amine compounds, especially heterocyclic, secondary, or tertiary amines, you likely have encountered problems with their chromatography using silica columns. With the amine groups being basic and silica being acidic, there is a natural attraction between the two. This sometimes strong attraction often requires the use of a competing amine in the solvent system. Modification of the mobile phase with the addition of a solvent like triethyl amine can provide a successful purification. Often times the use of an amine-modified stationary phase can provide the needed conditions to avoid the acid-base interaction that can interfere with a successful flash chromatography purification.

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