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Bob Bickler

How do I Choose the Right Column Size for Purification by Flash Chromatography?

June 13, 2019 at 4:59 PM / by Bob Bickler

In all my years of working with medicinal and organic chemists, I have found that choosing how many grams of silica to use for purification by flash chromatography is something frequently guessed at. Getting the size of the column right is awfully important because using too few grams of silica will doom your purification to failure and using more an optimal mass of the stationary phase means the purification  consumes excess silica, solvents, and a chemist's time. To determine the optimal amount of silica for a purification, I rely on a factor called ΔCV (delta Column Volume) to identify the best loading capacity on any cartridge. I have also found that ΔCV this is a better loading capacity predictor for flash purification than ΔRf.

I have previously discussed how solvent selection and solvent ratios impact purification quality and loading capacity. In this post I will discuss why ΔCV is a better separation quality predictor, and therefore load capacity estimator, than ΔRf.

Column Volume (CV) is a term commonly used with flash chromatography to describe compound retention or the amount of volume of mobile phase required to elute a compound.  A specific compound's CV is equal to the reciprocal of its Rf (1/Rf).

To determine cartridge size and load amount many chemists use a term called ΔRf (the difference between two adjacent compounds Rf values). There is a downside to using ΔRf as it does not fully take into account the compounds' resolution. For example, a pair of adjacent compounds with Rf values of 0.35 and 0.40 (ΔRf = 0.05) will not provide the same load or separation quality (resolution)as for the same compounds with Rf values of 0.15 and 0.20 (same ΔRf) even though all Rf values are in the optimal Rf zone (0.1-0.4). This is because the amount of actual resolution between the higher Rf values is actually less than with the lower Rf values.   This is best exemplified when you convert Rf values to column volumes (CV) using the formula CV = 1/Rf.  Using CV and ΔCV, compound resolution is factored in and separation quality and loading is more predictable.

The use of CV simplifies the transfer of TLC data to column chromatography because it is independent of flow rate and column size.  To determine separation quality and estimate loading capacity for a chemical mixture it is advantageous to use ΔCV over ΔRf; a good example follows.

The Rf data below shows an increasing ΔRf for compounds 3 and 4 with increasing EtOAc content. This data also shows the ΔRf for compound 3 and compound 2 decreases with increasing EtOAc content until 40% EtOAc when it increases significantly.  If you think about this you will find the ΔRf data are not rational - our first indication that ΔRf is not appropriate for determining separation quality. So, if you were to rely on these ΔRf values to determine the separation conditions and loading capacity, the data actually predict a higher sample load and better separation in 40% EtOAc than 30% EtOAc, again not rational given the Rf values at these EtOAc concentrations.

 

Rf 10% 20% 30% 40% ΔRf 10% 20% 30% 40%
1 0.83 0.84 0.86 0.89 1-2 0.44 0.36 0.25 0.00
2 0.38 0.48 0.61 0.89 2-3 0.23 0.16 0.10 0.17
3 0.15 0.32 0.51 0.72 3-4 0.10 0.10 0.12 0.13
4 0.06 0.22 0.39 0.59 4-5 0.02 0.06 0.10 0.11
5 0.04 0.16 0.29 0.48          

 

However, when we look at CV and ΔCV for the same compounds a different picture emerges where ΔCV decreases with increasing EtOAc concentration.  This does make sense since we know retention decreases and therefore the resolution also decreases with increasing EtOAc content (see chromatograms below). Therefore, ΔCV becomes the limiting factor in determining separation quality and, therefore, loading capacity.

Using data for the same pairs of compounds we see that at 20% EtOAc there is a ΔCV of 1.04 between compounds 2 and 3 and a slightly better ΔCV of 1.42 between compounds 3 and 4.  Though not horrible, it is not ideal if we want to maximize our load on the smallest possible flash chromatography cartridge. However, at 10% EtOAc the ΔCV for both sets of compounds (2 and 3, 3 and 4) are considerably better with the ΔCV for compounds 2 and 3 being 3.90 and for compounds 3 and 4 being almost 11!  Based on this ΔCV data purification at 10% EtOAc provides a far superior separation on the same size flash column.

CV 10% 20% 30% 40% CV 10% 20% 30% 40%
1 1.21 1.19 1.16 1.12 1-2 1.39 0.89 0.49 0.00
2 2.60 2.08 1.65 1.12 2-3 3.90 1.04 0.32 0.27
3 6.50 3.13 1.96 1.39 3-4 10.83 1.42 0.59 0.31
4 17.33 4.55 2.55 1.70 4-5 7.67 1.70 0.85 0.39
5 25.00 6.25 3.40 2.09          
 
20chromatogram
Isocratic separation of 100 mg of a 5-component mix in 20% EtOAc on a 10g silica flash cartridge. Although the compound of interest (compound 3) has an Rf in the correct Rf zone (Rf = 0.32) by TLC, its low separation quality from compound 2 (delta CV = 1.04) minimizes the loading capacity.
Isocratic separation of 100 mg of the 5-component mix on a 10 g silica flash cartridge in 10% EtOAc is superior because the delta CV between the compound of interest and its neighbors is superior, maximizing loading capacity.
Isocratic separation of 100 mg of the 5-component mix on a 10 g silica flash cartridge in 10% EtOAc shows complete resolution between the compound of interest (compound 3, yellow) and its neighbors because of superior delta CVs thus maximizing loading capacity.  The Rf value for compound 3 in 10% EtOAc is 0.15 and its delta CV from compound 2 is 3.90, significantly more than at 20% EtOAc.

So, when determining which cartridge size to use for any purification ensure that you have maximized ΔCV for your compound of interest from its nearest neighbors. 

What has been your experience?  Let me know.

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Topics: Developments, Flash Theory

Bob Bickler

Written by Bob Bickler

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